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molecularDNA

Publications

This version of molecularDNA is based on the following previous works and is currently being further developed.

  • Development of a novel computational technique to create DNA and cell geometrical models for Geant4-DNA, K. Chatzipapas et al., Phys. Med. 127 (2024) 104389 - link

  • Quantitative analysis of dose dependent DNA fragmentation in dry pBR322 plasmid using long read sequencing and Monte Carlo simulations, P. Beaudier et al., Sc. Rep. 14 (2024) 18650 - link

  • Geant4-DNA simulation of human cancer cells irradiation with helium ion beams, K. Chatzipapas et al., Phys. Med. 112 (2023) 102613 - link

  • Prediction of DNA rejoining kinetics and cell survival for V79 cells using Geant4-DNA, D. Sakata et al., Phys. Med. 105 (2023) 102508 - link - corrigendum

  • Simulation of DNA damage using Geant4-DNA: an overview of the “molecularDNA” example application, K. Chatzipapas et al., Prec. Radiat. Oncol. 7 (2023) 4–14 - link

  • Performance Evaluation for Repair of HSGc-C5 Carcinoma Cell Using Geant4-DNA, D. Sakata et al., Cancers 13 (2021) 6046 - link

  • A Geant4-DNA evaluation of radiation-induced DNA damage on a human fibroblast, W.-G. Shin et al., Cancers 13 (2021) 4940 - link

  • Full integrated Monte Carlo simulation for evaluating radiation induced DNA damage and following repair using Geant4-DNA, D.Sakata et al., Sc. Rep. 10 (2020) 20788 - link

  • Evaluation of early radiation DNA damage in a fractal cell nucleus model using Geant4-DNA, D. Sakata et al., Phys. Med. 62 (2019) 152-157 - link

  • Mechanistic DNA Damage Simulations in Geant4-DNA Part 2: Electron and Proton Damage in a Bacterial Cell, N. Lampe et al., Phys. Med. 48 (2018) 146-155 - link. Note that a bug was recently identified in the implementation of the bacterium geometry, a preliminary erratum is available here.

  • Mechanistic DNA Damage Simulations in Geant4-DNA Part 1: A parameter study in a simplified geometry, N. Lampe et al., Phys. Med. 48 (2018) 135-145 - link

A tutorial demonstrating molecularDNA is also available at this link.

Find more on the Geant4-DNA project website.

Authors (in alphabetical order)

  • J.M.C. Brown
  • K. Chatzipapas
  • P. Dondero
  • M. Dordevic
  • S. Incerti
  • M. Karamitros
  • N. Lampe
  • D. Sakata
  • W.G. Shin
  • R. Stanzani
  • H. Tran
  • S. Zein